Orientation of flanking sequences neighboring to insertions in long reads

Resolution of structural variation in diverse mouse genomes reveals chromatin remodeling due to transposable elements - ScienceDirect

Mechanisms of insertions at a DNA double-strand break - ScienceDirect

Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis, BMC Genomics

Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences, Genome Biology

Sensitivity of paired end chemistry of NGS in detecting small DNA

Genomics in the long-read sequencing era: Trends in Genetics

A) Two Alu elements in opposite orientations form an inverted Alu

Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis, BMC Genomics

npInv: accurate detection and genotyping of inversions using long read sub-alignment, BMC Bioinformatics

Detection of trait-associated structural variations using short-read sequencing - ScienceDirect

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