Accelerating the Ensemble Convergence of RNA Hairpin Simulations with a Replica Exchange Structure Reservoir

Capturing RNA Folding Free Energy with Coarse-Grained Molecular Dynamics Simulations

Maximizing accuracy of RNA structure in refinement against residual dipolar couplings

Nomenclature of the tRNA Model Systems under Study

Elucidating Solution Structures of Cyclic Peptides Using Molecular Dynamics Simulations. - Abstract - Europe PMC

Frontiers Computational Modeling as a Tool to Investigate PPI: From Drug Design to Tissue Engineering

Frontiers First Principles Calculation of Protein–Protein Dimer Affinities of ALS-Associated SOD1 Mutants

Two SBU Students Awarded Prestigious Goldwater Scholarships

PDF) Exploring RNA structure and dynamics through enhanced sampling simulations

Base-specific RNA force field improving the dynamics conformation of nucleotide - ScienceDirect

Understanding the mechanistic basis of non-coding RNA through molecular dynamics simulations. - Abstract - Europe PMC

Accelerating the Ensemble Convergence of RNA Hairpin Simulations with a Replica Exchange Structure Reservoir

Origins of biological function in DNA and RNA hairpin loop motifs from replica exchange molecular dynamics simulation - Physical Chemistry Chemical Physics (RSC Publishing)

How to understand atomistic molecular dynamics simulations of RNA and protein–RNA complexes? - Šponer - 2017 - WIREs RNA - Wiley Online Library